Interface v0 done

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

EXAFS_Monitor/README.md

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+# EXAFS_Monitor
+
+Live EXAFS data plotting ang simple analysis
+
+Dependencies: pyqtgraph, pyzmq
+
+
+  * monitor_gui_sub.py - plotting, analysis
+
+  * monitor_data_pub.py - data sending 
+
+  * .dat - data file examples

EXAFS_Monitor/monitor_data.py

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+#!/usr/bin/env python2
+# -*- coding: utf-8 -*-
+"""
+@author: murzinv
+"""
+
+import zmq
+from time import sleep
+
+port = "6400"
+context = zmq.Context()
+socket = context.socket(zmq.PUB)
+socket.bind("tcp://*:%s" % port)
+socket.setsockopt(zmq.LINGER, 1000)
+
+n = 5
+while True:
+    n = n % 7 + 1
+    with open("data/CuSO4_01M_flow_000%d.dat" % n, "r") as f:
+        socket.send_string("test")
+        sleep(0.5)
+        socket.send_string("clear")
+        print(f.name)
+        sleep(0.5)
+        socket.send_string(f.name)
+        f.readlines(15)
+        line = f.readline()
+        while line:
+            splitted = line.split()
+            print(splitted)
+            message = " ".join(
+                [splitted[0], splitted[5], splitted[6], splitted[7], splitted[8]])
+            socket.send_string(message)
+            line = f.readline()
+            sleep(0.05)

EXAFS_Monitor/monitor_gui.py

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+import zmq
+import os, sys
+import numpy as np
+from scipy.optimize import curve_fit
+from scipy.interpolate import LSQUnivariateSpline
+from scipy.ndimage import gaussian_filter1d
+from scipy.integrate import simps
+import pyqtgraph as pg
+from pyqtgraph.Qt import QtCore, QtGui
+from time import time
+
+FPS_LIMIT = 10
+EXAFS_SLOWDOWN_FACTOR = 10
+
+class ZeroMQ_Listener(QtCore.QObject):
+    message = QtCore.pyqtSignal(list)    
+    def __init__(self):       
+        QtCore.QObject.__init__(self)
+        self.context = zmq.Context()
+        self.socket = self.context.socket(zmq.SUB)
+        self.socket.connect ("tcp://127.0.0.1:6400") 
+        self.socket.setsockopt_string(zmq.SUBSCRIBE, "")
+        self.running = True
+        
+    def loop(self):
+        buf = []
+        t0 = time()
+        while self.running:
+            try:
+                string = self.socket.recv()
+                buf.append(string)
+                if time() - t0 > 1./FPS_LIMIT:
+                    self.message.emit(buf[:]) 
+                    buf = []
+                    t0 = time()
+            except:
+                pass
+
+    def finish(self):        
+        self.socket.close()
+        self.context.term()
+                            
+        
+class EXAFS_Extractor(QtCore.QObject):
+    message = QtCore.pyqtSignal(list)    
+    def __init__(self):       
+        QtCore.QObject.__init__(self)
+        self.running = True
+        self.pre1 = -150
+        self.pre2 = -50
+        self.post1 = 50
+        
+    def victoreen(self, e, c ,d):
+        f = 1.23986e4/e
+        return c*f**3 - d*f**4         
+        
+    def find_e0_idx(self, e, mu):
+        d = gaussian_filter1d(np.gradient(mu) / np.gradient(e), 3)
+        return np.argmax(d), d      
+        
+    def pre_edge(self, e, idx, mu):
+        idx1 = np.abs(e[idx] + self.pre1 - e).argmin()  
+        idx2 = np.abs(e[idx] + self.pre2 - e).argmin() 
+        popt, pcov = curve_fit(self.victoreen, e[idx1:idx2], mu[idx1:idx2])
+        return self.victoreen(e, popt[0], popt[1])
+        
+    def post_edge(self, e, idx, mu, pre, kw = 2):
+        # k indexes starts from e0
+        f = 0.262467 # magic number for calculation of k
+        k = np.sqrt(f * (e[idx:]-e[idx]))
+        kmin_idx = np.abs(e[idx] + self.post1 - e).argmin() - idx
+        fun_fit = (mu[idx:] - pre[idx:]) * k**kw
+        n_knots = int(2.0*(k.max() - k.min() ) / np.pi) + 1
+        knots = np.linspace(k[kmin_idx], k[-2], n_knots)
+        spl = LSQUnivariateSpline(k, fun_fit, knots)
+        post = spl(k[kmin_idx:])/(k[kmin_idx:])**kw 
+        edge_step = post[0]
+        norm = mu - pre
+        norm[idx + kmin_idx:] += -post + edge_step
+        norm /= edge_step
+        chi = norm[idx:] - 1
+        return k, gaussian_filter1d(chi*k*k, 3)
+
+    def hann_win(self, k, kmin, kmax, dk):
+        win = np.empty_like(k)
+        for i in range (len(k)):
+            if (k[i] < (kmin - 0.5*dk)): 
+                win[i] = 0.0
+            elif (k[i] >= (kmin - 0.5*dk)) and (k[i] <= (kmin + 0.5*dk)): 
+                win[i] = 0.5*(1.0 - np.cos(np.pi*(k[i] - kmin + 0.5*dk)/dk ) )
+            elif (k[i] > (kmin + 0.5*dk)) and (k[i] < (kmax - 0.5*dk)): 
+                win[i] = 1.0
+            elif (k[i] >= (kmax - 0.5*dk)) and (k[i] <= (kmax + 0.5*dk)): 
+                win[i] = 0.5*(1.0 + np.cos(np.pi*(k[i] - kmax + 0.5*dk)/dk ) )
+            elif (k[i] >(kmax + 0.5*dk)):
+                win[i] = 0.0
+        return win    
+
+    def make_ft(self, k, chi, r):
+        ft_im = np.empty_like(r)
+        ft_re = np.empty_like(r)
+        ft_mag = np.empty_like(r)
+        win = self.hann_win(k, 2.0, max(k) - 1., 1.0)  
+        for i in range (len(r)):
+	        ft_im[i] = simps (np.sin(2.0*k*r[i])*chi*win, k)
+	        ft_re[i] = simps (np.cos(2.0*k*r[i])*chi*win, k)
+	        ft_mag[i] = 1.0/np.sqrt(np.pi)*np.sqrt((ft_im[i]*ft_im[i] + ft_re[i]*ft_re[i])) 
+        return ft_mag
+        
+    def calculate(self, list_data):
+        e, mu1, mu2 = np.array(list_data[0]), np.array(list_data[1]), np.array(list_data[2]) 
+        e0_idx1, e0_idx2, deriv1, deriv2 = None, None, [], []  
+        try:
+            e0_idx1, deriv1 = self.find_e0_idx(e, mu1)
+            pre_edge1 = self.pre_edge(e, e0_idx1, mu1)
+            k1, chi1 = self.post_edge(e, e0_idx1, mu1, pre_edge1)
+        except:
+            k1, chi1 = [], []
+        try:
+            e0_idx2, deriv2 = self.find_e0_idx(e, mu2)
+            pre_edge2 = self.pre_edge(e, e0_idx2, mu2)
+            k2, chi2 = self.post_edge(e, e0_idx2, mu2, pre_edge2)
+        except:
+            k2, chi2 = [], []
+        r1, ft_mag1, r2, ft_mag2 = [], [], [], []
+        if len(k1) > 0: 
+            try:
+                r1 = np.arange(0.0, 6.0, 0.02)
+                ft_mag1 = self.make_ft(k1, chi1, r1)
+            except:
+                r1, ft_mag1 = [], []
+        if len(k2) > 0: 
+            try:
+                r2 = np.arange(0.0, 6.0, 0.02)
+                ft_mag2 = self.make_ft(k2, chi2, r2)
+            except:
+                r2, ft_mag2 = [], []
+        self.message.emit([e0_idx1, deriv1, k1, chi1, r1, ft_mag1, e0_idx2, deriv2, k2, chi2, r2, ft_mag2, e])
+
+class MonitorWidget(QtGui.QWidget):
+    message_data = QtCore.pyqtSignal(list) 
+    def __init__(self, app):
+        QtGui.QWidget.__init__(self)
+        self.app = app
+        
+        self.thread = QtCore.QThread()
+        self.zeromq_listener = ZeroMQ_Listener()
+        self.zeromq_listener.moveToThread(self.thread)        
+        self.thread.started.connect(self.zeromq_listener.loop)
+        self.zeromq_listener.message.connect(self.signal_received)        
+        QtCore.QTimer.singleShot(0, self.thread.start)
+        
+        self.thread2 = QtCore.QThread()
+        self.exafs_extractor = EXAFS_Extractor()
+        self.exafs_extractor.moveToThread(self.thread2)        
+        self.exafs_extractor.message.connect(self.update_exafs)        
+        self.message_data.connect(self.exafs_extractor.calculate)   
+        QtCore.QTimer.singleShot(1, self.thread2.start)
+        
+        self.layout = QtGui.QGridLayout()
+        self.pw1 = pg.PlotWidget(title='I0 [counts] / Energy[eV]') 
+        self.pw2 = pg.PlotWidget(title='I1 [counts] / Energy[eV]') 
+        self.pw3 = pg.PlotWidget(title='I2 [counts] / Energy[eV]') 
+        self.pw4 = pg.PlotWidget(title='IP [counts] / Energy[eV]')
+        
+        self.hbl = QtGui.QHBoxLayout()
+        self.flabel = QtGui.QLabel("N/A")
+        self.flabel.setStyleSheet("color: #fff")
+        self.fbtn = QtGui.QPushButton("Open data folder")
+        self.fbtn.clicked.connect(self.open_folder)
+        self.fbtn.setSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
+        self.fbtn.setStyleSheet('''
+                                 QPushButton{   
+                                             color: #777; font-family:'Arial';
+                                             font-weight: bold;
+                                             font-size:16px;
+                                             border: 2px solid #777;
+                                             border-radius: 10px;
+                                             min-width: 200px;
+                                             padding: 7px;
+                                             outline: none;
+                                             }'''
+                                ) 
+        self.viewlabel = QtGui.QLabel("Currents")
+        self.viewlabel.setAlignment(QtCore.Qt.AlignCenter)
+        self.viewlabel.setStyleSheet('''QLabel{
+                                             color: #fff; font-family:'Arial';
+                                             font-weight: bold;
+                                             font-size:16px;
+                                             min-width: 200px;
+                                             max-width: 200px;
+                                             outline: none;
+                                             }'''
+                                )
+        self.btn = QtGui.QPushButton("Switch to XANES")
+        self.btn.clicked.connect(self.switchView)
+        self.view = 0
+        self.btn.setSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
+        self.btn.setStyleSheet('''
+                                 QPushButton{   
+                                             color: #777; font-family:'Arial';
+                                             font-weight: bold;
+                                             font-size:16px;
+                                             border: 2px solid #777;
+                                             border-radius: 10px;
+                                             min-width: 200px;
+                                             padding: 7px;
+                                             outline: none;
+                                             }'''
+                                )       
+        self.hbl.addWidget(self.fbtn)
+        self.hbl.addWidget(self.flabel)
+        self.hbl.addWidget(self.viewlabel)
+        self.hbl.addWidget(self.btn)
+        self.datafilename = None
+        
+        self.layout.addLayout(self.hbl, 0, 0, 1, 2)
+        self.layout.addWidget(self.pw1, 1, 0)
+        self.layout.addWidget(self.pw2, 1, 1)
+        self.layout.addWidget(self.pw3, 2, 0)
+        self.layout.addWidget(self.pw4, 2, 1)
+        self.setLayout(self.layout)
+        self.app = app
+        
+        self.counter = 0
+        self.energy = []
+        self.denergy = []
+        self.data_i0 = []
+        self.data_i1 = []
+        self.data_i2 = []
+        self.data_ip = []
+        self.mu = []
+        self.muf = []
+        self.dmu = []
+        self.dmuf = []
+        self.k = []
+        self.kf = []
+        self.chi = []
+        self.chif = []
+        self.r = []
+        self.ft_mag = []
+        self.rf = []
+        self.ft_magf = []
+        self.e0i = None
+        self.e0if = None
+        self.curve1 = self.pw1.plot(self.energy, self.data_i0, pen = "b")
+        self.curve2 = self.pw2.plot(self.energy, self.data_i1, pen = "g")
+        self.curve3 = self.pw3.plot(self.energy, self.data_i2, pen = "r")
+        self.curve4 = self.pw4.plot(self.energy, self.data_ip, pen = "c")
+        self.pen_orchid = pg.mkPen(color=(230, 170, 250))
+        self.pen_lime = pg.mkPen(color=(190, 250, 0))
+        self.text2 = pg.TextItem("", anchor=(0.5, 2))
+        self.arrow2 = pg.ArrowItem(angle=-90)
+        self.text4 = pg.TextItem("", anchor=(0.5, 2))
+        self.arrow4 = pg.ArrowItem(angle=-90)
+        
+    def signal_received(self, message_buf):
+        for message in message_buf:
+            if message == "test":
+                pass
+            elif message == "clear":
+                self.counter = 0
+                self.energy = []
+                self.denergy = []
+                self.data_i0 = []
+                self.data_i1 = []
+                self.data_i2 = []
+                self.data_ip = []
+                self.mu = []
+                self.muf = []
+                self.dmu = []
+                self.dmuf = []
+                self.k = []
+                self.chi = []
+                self.kf = []
+                self.chif = []
+                self.r = []
+                self.rf = []
+                self.ft_mag = []
+                self.ft_magf = []
+                self.e0i = None
+                self.e0if = None
+                self.updatePlot() 
+            elif (message[-4:] == ".dat") or (message[-4:] == ".nxs"):
+                self.flabel.setText(message)
+                self.datafilename = message
+            else:
+                data = [float(v) for v in message.split()] 
+                self.energy.append(data[0])
+                self.data_i0.append(data[1])
+                self.data_i1.append(data[2])
+                self.data_i2.append(data[3])
+                self.data_ip.append(data[4])
+                self.mu.append(np.log(data[1]/data[2]))
+                self.muf.append(data[4]/data[1])
+        self.updatePlot()            
+        if not self.counter%EXAFS_SLOWDOWN_FACTOR:
+            self.message_data.emit([self.energy, self.mu, self.muf])
+        self.counter += 1        
+        self.app.processEvents()
+
+    def switchView(self):
+        self.view = (self.view + 1)%3
+        if self.view == 0:
+            self.viewlabel.setText("Currents")
+            self.btn.setText("Switch to XANES")
+            self.pw1.setTitle("I0 [counts] / Energy[eV]")
+            self.pw2.setTitle("I1 [counts] / Energy[eV]")
+            self.pw3.setTitle("I2 [counts] / Energy[eV]")
+            self.pw4.setTitle("IP [counts] / Energy[eV]")
+            self.pw2.removeItem(self.text2)
+            self.pw2.removeItem(self.arrow2)
+            self.pw4.removeItem(self.text4)
+            self.pw4.removeItem(self.arrow4)
+        elif self.view == 1:
+            self.viewlabel.setText("XANES")
+            self.btn.setText("Switch to EXAFS")
+            self.pw1.setTitle("mu trans. / Energy[eV]")
+            self.pw2.setTitle("deriv. mu trans. / Energy[eV]")
+            self.pw3.setTitle("mu fluo. / Energy[eV]")
+            self.pw4.setTitle("deriv. mu fluo. / Energy[eV]")
+        elif self.view == 2:
+            self.viewlabel.setText("EXAFS")
+            self.btn.setText("Switch to Currents")
+            self.pw1.setTitle(u"\u03C7" + "(k)*k^2 trans. / k[" + u"\u212B" + "^-1]")
+            self.pw2.setTitle("| FT(" + u"\u03C7" + "(k)*k^2 trans." + ") | / R[" + u"\u212B" + "]")
+            self.pw3.setTitle(u"\u03C7" + "(k)*k^2 fluo. / k[" + u"\u212B" + "^-1]")
+            self.pw4.setTitle("| FT(" + u"\u03C7" + "(k)*k^2 fluo." + ") | / R[" + u"\u212B" + "]")
+            self.pw2.removeItem(self.text2)
+            self.pw2.removeItem(self.arrow2)
+            self.pw4.removeItem(self.text4)
+            self.pw4.removeItem(self.arrow4)
+            
+        #https://github.com/pyqtgraph/pyqtgraph/issues/821    
+        self.pw1.getAxis('left').textWidth = 0
+        self.pw1.getAxis('left')._updateWidth()
+        self.pw2.getAxis('left').textWidth = 0
+        self.pw2.getAxis('left')._updateWidth()
+        self.pw3.getAxis('left').textWidth = 0
+        self.pw3.getAxis('left')._updateWidth()
+        self.pw4.getAxis('left').textWidth = 0
+        self.pw4.getAxis('left')._updateWidth()
+
+        self.pw1.enableAutoRange()
+        self.pw2.enableAutoRange()
+        self.pw3.enableAutoRange()
+        self.pw4.enableAutoRange()
+        self.updatePlot()
+            
+    def updatePlot(self):
+        if self.view == 0:
+            self.curve1.setData(self.energy, self.data_i0)
+            self.curve1.setPen("b")
+            self.curve2.setData(self.energy, self.data_i1)
+            self.curve2.setPen("g")
+            self.curve3.setData(self.energy, self.data_i2)
+            self.curve3.setPen("r")
+            self.curve4.setData(self.energy, self.data_ip)
+            self.curve4.setPen("c")   
+        elif self.view == 1:
+            self.curve1.setData(self.energy, self.mu)
+            self.curve1.setPen(self.pen_lime)
+            self.curve2.setData(self.denergy, self.dmu)
+            self.curve2.setPen(self.pen_lime)
+            self.pw2.removeItem(self.text2)
+            self.pw2.removeItem(self.arrow2)
+            if self.e0i is not None:
+                self.text2.setText("%.2f"%self.denergy[self.e0i]) 
+                self.text2.setPos(self.denergy[self.e0i], self.dmu[self.e0i])
+                self.arrow2.setPos(self.denergy[self.e0i], self.dmu[self.e0i])
+                self.pw2.addItem(self.text2)
+                self.pw2.addItem(self.arrow2)
+            self.pw4.removeItem(self.text4)
+            self.pw4.removeItem(self.arrow4)
+            self.curve3.setData(self.energy, self.muf)
+            self.curve3.setPen(self.pen_orchid)
+            self.curve4.setData(self.denergy, self.dmuf)
+            self.curve4.setPen(self.pen_orchid)
+            if self.e0if is not None:
+                self.text4.setText("%.2f"%self.denergy[self.e0if]) 
+                self.text4.setPos(self.denergy[self.e0if], self.dmuf[self.e0if])
+                self.arrow4.setPos(self.denergy[self.e0if], self.dmuf[self.e0if])
+                self.pw4.addItem(self.text4)
+                self.pw4.addItem(self.arrow4)
+        elif self.view == 2:
+            self.curve1.setData(self.k, self.chi)
+            self.curve1.setPen(self.pen_lime)
+            self.curve2.setData(self.r, self.ft_mag)
+            self.curve2.setPen(self.pen_lime)
+            self.curve3.setData(self.kf, self.chif)
+            self.curve3.setPen(self.pen_orchid)
+            self.curve4.setData(self.rf, self.ft_magf)
+            self.curve4.setPen(self.pen_orchid)        
+    
+    def update_exafs(self, data_list):
+        self.e0i, self.dmu = data_list[0], data_list[1][:]
+        self.k, self.chi = data_list[2][:], data_list[3][:]
+        self.r, self.ft_mag = data_list[4][:], data_list[5][:]
+        self.e0if, self.dmuf  =  data_list[6], data_list[7][:]
+        self.kf, self.chif = data_list[8][:], data_list[9][:]
+        self.rf, self.ft_magf = data_list[10][:], data_list[11][:]
+        self.denergy = data_list[12][:]
+        self.updatePlot()
+    
+    def open_folder(self):
+        if self.datafilename:
+            os.system('xdg-open "%s"' %os.path.dirname(self.datafilename))
+                
+    def closeEvent(self, event):
+        self.zeromq_listener.running = False
+        self.zeromq_listener.finish()
+        self.thread.quit()
+        self.thread.wait()    
+        self.thread2.quit()
+        self.thread2.wait()  
+        self.app.processEvents()
+        
+            
+if __name__ == '__main__':
+    app = QtGui.QApplication([])
+    mw = MonitorWidget(app)
+    mw.setStyleSheet("background-color: #000")
+    mw.setWindowTitle("Data monitor")
+    mw.show()
+    sys.exit(app.exec_())

README.md

@@ -6,9 +6,13 @@ Author: Ruidy Nemausat
 
 Graphical User Interface allowing to:
 
-- create measurement sequences
-- visualize live data
-- quick treatment
+- create measurement sequences: choose between step and continuous
+- visualize live step-scan data, after each scan continuous-scan data
+- quick treatment: visualisation in E, k and R spaces
+
+## Notes
+
+- `pyuic5 main.ui > main_gui.py` ⚠️ Change main class name to MainGui afterwards
 
 ## Architecture
 

main.ui

@@ -0,0 +1,267 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>widget</class>
+ <widget class="QWidget" name="widget">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>798</width>
+    <height>575</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>P65 XAFS Scan Manager</string>
+  </property>
+  <layout class="QHBoxLayout" name="horizontalLayout_2">
+   <item>
+    <widget class="QToolBox" name="toolBox">
+     <property name="whatsThis">
+      <string>P65 XAFS Scan Manager</string>
+     </property>
+     <property name="accessibleName">
+      <string>P65 XAFS Scan Manager</string>
+     </property>
+     <property name="accessibleDescription">
+      <string>P65 XAFS Scan Manager</string>
+     </property>
+     <property name="currentIndex">
+      <number>0</number>
+     </property>
+     <widget class="QWidget" name="scanParameterPage">
+      <property name="geometry">
+       <rect>
+        <x>0</x>
+        <y>0</y>
+        <width>774</width>
+        <height>483</height>
+       </rect>
+      </property>
+      <property name="accessibleName">
+       <string/>
+      </property>
+      <attribute name="label">
+       <string>Scan Parameters</string>
+      </attribute>
+      <layout class="QHBoxLayout" name="horizontalLayout">
+       <item>
+        <layout class="QGridLayout" name="gridLayout">
+         <item row="0" column="0">
+          <widget class="QPushButton" name="pushButton">
+           <property name="maximumSize">
+            <size>
+             <width>75</width>
+             <height>16777215</height>
+            </size>
+           </property>
+           <property name="text">
+            <string>Add</string>
+           </property>
+          </widget>
+         </item>
+         <item row="0" column="1">
+          <widget class="QPushButton" name="pushButton_3">
+           <property name="minimumSize">
+            <size>
+             <width>0</width>
+             <height>0</height>
+            </size>
+           </property>
+           <property name="maximumSize">
+            <size>
+             <width>75</width>
+             <height>16777215</height>
+            </size>
+           </property>
+           <property name="text">
+            <string>Copy</string>
+           </property>
+          </widget>
+         </item>
+         <item row="0" column="2">
+          <widget class="QPushButton" name="pushButton_2">
+           <property name="maximumSize">
+            <size>
+             <width>75</width>
+             <height>16777215</height>
+            </size>
+           </property>
+           <property name="text">
+            <string>Remove</string>
+           </property>
+          </widget>
+         </item>
+         <item row="0" column="3">
+          <widget class="QPushButton" name="pushButton_7">
+           <property name="maximumSize">
+            <size>
+             <width>16777215</width>
+             <height>16777215</height>
+            </size>
+           </property>
+           <property name="text">
+            <string>Clear</string>
+           </property>
+          </widget>
+         </item>
+         <item row="1" column="0" colspan="4">
+          <widget class="QListWidget" name="listWidget">
+           <item>
+            <property name="text">
+             <string>Scan #1</string>
+            </property>
+           </item>
+          </widget>
+         </item>
+         <item row="2" column="0" colspan="2">
+          <widget class="QPushButton" name="pushButton_4">
+           <property name="text">
+            <string>Start</string>
+           </property>
+          </widget>
+         </item>
+         <item row="2" column="2" colspan="2">
+          <widget class="QPushButton" name="pushButton_5">
+           <property name="text">
+            <string>Pause</string>
+           </property>
+          </widget>
+         </item>
+        </layout>
+       </item>
+      </layout>
+     </widget>
+     <widget class="QWidget" name="DataStoragePage">
+      <property name="geometry">
+       <rect>
+        <x>0</x>
+        <y>0</y>
+        <width>774</width>
+        <height>483</height>
+       </rect>
+      </property>
+      <attribute name="label">
+       <string>Data Storage</string>
+      </attribute>
+      <widget class="QSpinBox" name="spinBox">
+       <property name="geometry">
+        <rect>
+         <x>420</x>
+         <y>60</y>
+         <width>48</width>
+         <height>24</height>
+        </rect>
+       </property>
+      </widget>
+      <widget class="QWidget" name="">
+       <property name="geometry">
+        <rect>
+         <x>12</x>
+         <y>12</y>
+         <width>192</width>
+         <height>157</height>
+        </rect>
+       </property>
+       <layout class="QGridLayout" name="gridLayout_2">
+        <item row="0" column="0">
+         <widget class="QLabel" name="label_2">
+          <property name="sizePolicy">
+           <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
+            <horstretch>0</horstretch>
+            <verstretch>0</verstretch>
+           </sizepolicy>
+          </property>
+          <property name="font">
+           <font>
+            <pointsize>20</pointsize>
+            <weight>75</weight>
+            <bold>true</bold>
+            <kerning>true</kerning>
+           </font>
+          </property>
+          <property name="text">
+           <string>Data Storage</string>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="0">
+         <widget class="QTableWidget" name="tableWidget_2">
+          <property name="sizePolicy">
+           <sizepolicy hsizetype="Expanding" vsizetype="Maximum">
+            <horstretch>0</horstretch>
+            <verstretch>0</verstretch>
+           </sizepolicy>
+          </property>
+          <property name="minimumSize">
+           <size>
+            <width>0</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>180</width>
+            <height>80</height>
+           </size>
+          </property>
+          <row>
+           <property name="text">
+            <string>Location</string>
+           </property>
+          </row>
+          <row>
+           <property name="text">
+            <string>Folder Name</string>
+           </property>
+          </row>
+          <column>
+           <property name="text">
+            <string>Value</string>
+           </property>
+          </column>
+          <item row="0" column="0">
+           <property name="text">
+            <string>UserBeamtime</string>
+           </property>
+          </item>
+          <item row="1" column="0">
+           <property name="text">
+            <string>P.I.</string>
+           </property>
+          </item>
+         </widget>
+        </item>
+        <item row="2" column="0">
+         <widget class="QPushButton" name="pushButton_6">
+          <property name="text">
+           <string>Save</string>
+          </property>
+         </widget>
+        </item>
+       </layout>
+      </widget>
+     </widget>
+    </widget>
+   </item>
+  </layout>
+ </widget>
+ <resources/>
+ <connections>
+  <connection>
+   <sender>pushButton_6</sender>
+   <signal>clicked()</signal>
+   <receiver>spinBox</receiver>
+   <slot>stepUp()</slot>
+   <hints>
+    <hint type="sourcelabel">
+     <x>174</x>
+     <y>231</y>
+    </hint>
+    <hint type="destinationlabel">
+     <x>448</x>
+     <y>158</y>
+    </hint>
+   </hints>
+  </connection>
+ </connections>
+</ui>

mainWindow.ui

@@ -0,0 +1,263 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>MainWindow</class>
+ <widget class="QMainWindow" name="MainWindow">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>800</width>
+    <height>600</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>MainWindow</string>
+  </property>
+  <widget class="QWidget" name="centralwidget">
+   <layout class="QHBoxLayout" name="horizontalLayout_2">
+    <item>
+     <widget class="QToolBox" name="toolBox">
+      <property name="whatsThis">
+       <string>P65 XAFS Scan Manager</string>
+      </property>
+      <property name="accessibleName">
+       <string>P65 XAFS Scan Manager</string>
+      </property>
+      <property name="accessibleDescription">
+       <string>P65 XAFS Scan Manager</string>
+      </property>
+      <property name="currentIndex">
+       <number>0</number>
+      </property>
+      <widget class="QWidget" name="scanParameterPage">
+       <property name="geometry">
+        <rect>
+         <x>0</x>
+         <y>0</y>
+         <width>776</width>
+         <height>465</height>
+        </rect>
+       </property>
+       <property name="accessibleName">
+        <string/>
+       </property>
+       <attribute name="label">
+        <string>Scan Parameters</string>
+       </attribute>
+       <layout class="QHBoxLayout" name="horizontalLayout">
+        <item>
+         <layout class="QGridLayout" name="gridLayout">
+          <item row="0" column="0">
+           <widget class="QPushButton" name="pushButton">
+            <property name="maximumSize">
+             <size>
+              <width>75</width>
+              <height>16777215</height>
+             </size>
+            </property>
+            <property name="text">
+             <string>Add</string>
+            </property>
+           </widget>
+          </item>
+          <item row="0" column="1">
+           <widget class="QPushButton" name="pushButton_3">
+            <property name="minimumSize">
+             <size>
+              <width>0</width>
+              <height>0</height>
+             </size>
+            </property>
+            <property name="maximumSize">
+             <size>
+              <width>75</width>
+              <height>16777215</height>
+             </size>
+            </property>
+            <property name="text">
+             <string>Copy</string>
+            </property>
+           </widget>
+          </item>
+          <item row="0" column="2">
+           <widget class="QPushButton" name="pushButton_2">
+            <property name="maximumSize">
+             <size>
+              <width>75</width>
+              <height>16777215</height>
+             </size>
+            </property>
+            <property name="text">
+             <string>Remove</string>
+            </property>
+           </widget>
+          </item>
+          <item row="0" column="3">
+           <widget class="QPushButton" name="pushButton_7">
+            <property name="maximumSize">
+             <size>
+              <width>16777215</width>
+              <height>16777215</height>
+             </size>
+            </property>
+            <property name="text">
+             <string>Clear</string>
+            </property>
+           </widget>
+          </item>
+          <item row="1" column="0" colspan="4">
+           <widget class="QListWidget" name="listWidget">
+            <item>
+             <property name="text">
+              <string>Scan #1</string>
+             </property>
+            </item>
+           </widget>
+          </item>
+          <item row="2" column="0" colspan="2">
+           <widget class="QPushButton" name="pushButton_4">
+            <property name="text">
+             <string>Start</string>
+            </property>
+           </widget>
+          </item>
+          <item row="2" column="2" colspan="2">
+           <widget class="QPushButton" name="pushButton_5">
+            <property name="text">
+             <string>Pause</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </item>
+       </layout>
+      </widget>
+      <widget class="QWidget" name="DataStoragePage">
+       <property name="geometry">
+        <rect>
+         <x>0</x>
+         <y>0</y>
+         <width>98</width>
+         <height>28</height>
+        </rect>
+       </property>
+       <attribute name="label">
+        <string>Data Storage</string>
+       </attribute>
+       <widget class="QSpinBox" name="spinBox">
+        <property name="geometry">
+         <rect>
+          <x>420</x>
+          <y>60</y>
+          <width>48</width>
+          <height>24</height>
+         </rect>
+        </property>
+       </widget>
+       <widget class="QWidget" name="layoutWidget">
+        <property name="geometry">
+         <rect>
+          <x>12</x>
+          <y>12</y>
+          <width>192</width>
+          <height>157</height>
+         </rect>
+        </property>
+        <layout class="QGridLayout" name="gridLayout_2">
+         <item row="0" column="0">
+          <widget class="QLabel" name="label_2">
+           <property name="sizePolicy">
+            <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
+             <horstretch>0</horstretch>
+             <verstretch>0</verstretch>
+            </sizepolicy>
+           </property>
+           <property name="font">
+            <font>
+             <pointsize>20</pointsize>
+             <weight>75</weight>
+             <bold>true</bold>
+             <kerning>true</kerning>
+            </font>
+           </property>
+           <property name="text">
+            <string>Data Storage</string>
+           </property>
+          </widget>
+         </item>
+         <item row="1" column="0">
+          <widget class="QTableWidget" name="tableWidget_2">
+           <property name="sizePolicy">
+            <sizepolicy hsizetype="Expanding" vsizetype="Maximum">
+             <horstretch>0</horstretch>
+             <verstretch>0</verstretch>
+            </sizepolicy>
+           </property>
+           <property name="minimumSize">
+            <size>
+             <width>0</width>
+             <height>0</height>
+            </size>
+           </property>
+           <property name="maximumSize">
+            <size>
+             <width>180</width>
+             <height>80</height>
+            </size>
+           </property>
+           <row>
+            <property name="text">
+             <string>Location</string>
+            </property>
+           </row>
+           <row>
+            <property name="text">
+             <string>Folder Name</string>
+            </property>
+           </row>
+           <column>
+            <property name="text">
+             <string>Value</string>
+            </property>
+           </column>
+           <item row="0" column="0">
+            <property name="text">
+             <string>UserBeamtime</string>
+            </property>
+           </item>
+           <item row="1" column="0">
+            <property name="text">
+             <string>P.I.</string>
+            </property>
+           </item>
+          </widget>
+         </item>
+         <item row="2" column="0">
+          <widget class="QPushButton" name="pushButton_6">
+           <property name="text">
+            <string>Save</string>
+           </property>
+          </widget>
+         </item>
+        </layout>
+       </widget>
+      </widget>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QMenuBar" name="menubar">
+   <property name="geometry">
+    <rect>
+     <x>0</x>
+     <y>0</y>
+     <width>800</width>
+     <height>22</height>
+    </rect>
+   </property>
+  </widget>
+  <widget class="QStatusBar" name="statusbar"/>
+ </widget>
+ <resources/>
+ <connections/>
+</ui>

main_gui.py

@@ -0,0 +1,151 @@
+from PyQt5 import QtCore, QtGui, QtWidgets
+
+
+class MainGui(object):
+    def setupUi(self, widget):
+        widget.setObjectName("widget")
+        widget.resize(798, 575)
+        self.horizontalLayout_2 = QtWidgets.QHBoxLayout(widget)
+        self.horizontalLayout_2.setObjectName("horizontalLayout_2")
+        self.toolBox = QtWidgets.QToolBox(widget)
+        self.toolBox.setObjectName("toolBox")
+        self.scanParameterPage = QtWidgets.QWidget()
+        self.scanParameterPage.setGeometry(QtCore.QRect(0, 0, 774, 483))
+        self.scanParameterPage.setAccessibleName("")
+        self.scanParameterPage.setObjectName("scanParameterPage")
+        self.horizontalLayout = QtWidgets.QHBoxLayout(self.scanParameterPage)
+        self.horizontalLayout.setObjectName("horizontalLayout")
+        self.gridLayout = QtWidgets.QGridLayout()
+        self.gridLayout.setObjectName("gridLayout")
+        self.pushButton = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton.setMaximumSize(QtCore.QSize(75, 16777215))
+        self.pushButton.setObjectName("pushButton")
+        self.gridLayout.addWidget(self.pushButton, 0, 0, 1, 1)
+        self.pushButton_3 = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton_3.setMinimumSize(QtCore.QSize(0, 0))
+        self.pushButton_3.setMaximumSize(QtCore.QSize(75, 16777215))
+        self.pushButton_3.setObjectName("pushButton_3")
+        self.gridLayout.addWidget(self.pushButton_3, 0, 1, 1, 1)
+        self.pushButton_2 = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton_2.setMaximumSize(QtCore.QSize(75, 16777215))
+        self.pushButton_2.setObjectName("pushButton_2")
+        self.gridLayout.addWidget(self.pushButton_2, 0, 2, 1, 1)
+        self.pushButton_7 = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton_7.setMaximumSize(QtCore.QSize(16777215, 16777215))
+        self.pushButton_7.setObjectName("pushButton_7")
+        self.gridLayout.addWidget(self.pushButton_7, 0, 3, 1, 1)
+        self.listWidget = QtWidgets.QListWidget(self.scanParameterPage)
+        self.listWidget.setObjectName("listWidget")
+        item = QtWidgets.QListWidgetItem()
+        self.listWidget.addItem(item)
+        self.gridLayout.addWidget(self.listWidget, 1, 0, 1, 4)
+        self.pushButton_4 = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton_4.setObjectName("pushButton_4")
+        self.gridLayout.addWidget(self.pushButton_4, 2, 0, 1, 2)
+        self.pushButton_5 = QtWidgets.QPushButton(self.scanParameterPage)
+        self.pushButton_5.setObjectName("pushButton_5")
+        self.gridLayout.addWidget(self.pushButton_5, 2, 2, 1, 2)
+        self.horizontalLayout.addLayout(self.gridLayout)
+        self.toolBox.addItem(self.scanParameterPage, "")
+        self.DataStoragePage = QtWidgets.QWidget()
+        self.DataStoragePage.setGeometry(QtCore.QRect(0, 0, 774, 483))
+        self.DataStoragePage.setObjectName("DataStoragePage")
+        self.spinBox = QtWidgets.QSpinBox(self.DataStoragePage)
+        self.spinBox.setGeometry(QtCore.QRect(420, 60, 48, 24))
+        self.spinBox.setObjectName("spinBox")
+        self.widget = QtWidgets.QWidget(self.DataStoragePage)
+        self.widget.resize(192, 157)
+        self.widget.setObjectName("widget")
+        self.gridLayout_2 = QtWidgets.QGridLayout(self.widget)
+        self.gridLayout_2.setContentsMargins(0, 0, 0, 0)
+        self.gridLayout_2.setObjectName("gridLayout_2")
+        self.label_2 = QtWidgets.QLabel(self.widget)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Maximum)
+        sizePolicy.setHorizontalStretch(0)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(
+            self.label_2.sizePolicy().hasHeightForWidth())
+        self.label_2.setSizePolicy(sizePolicy)
+        font = QtGui.QFont()
+        font.setPointSize(20)
+        font.setBold(True)
+        font.setWeight(75)
+        font.setKerning(True)
+        self.label_2.setFont(font)
+        self.label_2.setObjectName("label_2")
+        self.gridLayout_2.addWidget(self.label_2, 0, 0, 1, 1)
+        self.tableWidget_2 = QtWidgets.QTableWidget(self.widget)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Maximum)
+        sizePolicy.setHorizontalStretch(0)
+        sizePolicy.setVerticalStretch(0)
+        sizePolicy.setHeightForWidth(
+            self.tableWidget_2.sizePolicy().hasHeightForWidth())
+        self.tableWidget_2.setSizePolicy(sizePolicy)
+        self.tableWidget_2.setMinimumSize(QtCore.QSize(0, 0))
+        self.tableWidget_2.setMaximumSize(QtCore.QSize(180, 80))
+        self.tableWidget_2.setObjectName("tableWidget_2")
+        self.tableWidget_2.setColumnCount(1)
+        self.tableWidget_2.setRowCount(2)
+        item = QtWidgets.QTableWidgetItem()
+        self.tableWidget_2.setVerticalHeaderItem(0, item)
+        item = QtWidgets.QTableWidgetItem()
+        self.tableWidget_2.setVerticalHeaderItem(1, item)
+        item = QtWidgets.QTableWidgetItem()
+        self.tableWidget_2.setHorizontalHeaderItem(0, item)
+        item = QtWidgets.QTableWidgetItem()
+        self.tableWidget_2.setItem(0, 0, item)
+        item = QtWidgets.QTableWidgetItem()
+        self.tableWidget_2.setItem(1, 0, item)
+        self.gridLayout_2.addWidget(self.tableWidget_2, 1, 0, 1, 1)
+        self.pushButton_6 = QtWidgets.QPushButton(self.widget)
+        self.pushButton_6.setObjectName("pushButton_6")
+        self.gridLayout_2.addWidget(self.pushButton_6, 2, 0, 1, 1)
+        self.toolBox.addItem(self.DataStoragePage, "")
+        self.horizontalLayout_2.addWidget(self.toolBox)
+
+        self.retranslateUi(widget)
+        self.toolBox.setCurrentIndex(0)
+        self.pushButton_6.clicked.connect(self.spinBox.stepUp)
+        QtCore.QMetaObject.connectSlotsByName(widget)
+
+    def retranslateUi(self, widget):
+        _translate = QtCore.QCoreApplication.translate
+        widget.setWindowTitle(_translate("widget", "P65 XAFS Scan Manager"))
+        self.toolBox.setWhatsThis(_translate(
+            "widget", "P65 XAFS Scan Manager"))
+        self.toolBox.setAccessibleName(
+            _translate("widget", "P65 XAFS Scan Manager"))
+        self.toolBox.setAccessibleDescription(
+            _translate("widget", "P65 XAFS Scan Manager"))
+        self.pushButton.setText(_translate("widget", "Add"))
+        self.pushButton_3.setText(_translate("widget", "Copy"))
+        self.pushButton_2.setText(_translate("widget", "Remove"))
+        self.pushButton_7.setText(_translate("widget", "Clear"))
+        __sortingEnabled = self.listWidget.isSortingEnabled()
+        self.listWidget.setSortingEnabled(False)
+        item = self.listWidget.item(0)
+        item.setText(_translate("widget", "Scan #1"))
+        self.listWidget.setSortingEnabled(__sortingEnabled)
+        self.pushButton_4.setText(_translate("widget", "Start"))
+        self.pushButton_5.setText(_translate("widget", "Pause"))
+        self.toolBox.setItemText(self.toolBox.indexOf(
+            self.scanParameterPage), _translate("widget", "Scan Parameters"))
+        self.label_2.setText(_translate("widget", "Data Storage"))
+        item = self.tableWidget_2.verticalHeaderItem(0)
+        item.setText(_translate("widget", "Location"))
+        item = self.tableWidget_2.verticalHeaderItem(1)
+        item.setText(_translate("widget", "Folder Name"))
+        item = self.tableWidget_2.horizontalHeaderItem(0)
+        item.setText(_translate("widget", "Value"))
+        __sortingEnabled = self.tableWidget_2.isSortingEnabled()
+        self.tableWidget_2.setSortingEnabled(False)
+        item = self.tableWidget_2.item(0, 0)
+        item.setText(_translate("widget", "UserBeamtime"))
+        item = self.tableWidget_2.item(1, 0)
+        item.setText(_translate("widget", "P.I."))
+        self.tableWidget_2.setSortingEnabled(__sortingEnabled)
+        self.pushButton_6.setText(_translate("widget", "Save"))
+        self.toolBox.setItemText(self.toolBox.indexOf(
+            self.DataStoragePage), _translate("widget", "Data Storage"))

p65_xafs_GUI.py

@@ -1,20 +0,0 @@
-"""
-Last change: Tuesday dec 17 2019
-
-@author: Ruidy Nemausat
-
-"""
-import sys
-from PyQt5.QtWidgets import QApplication, QWidget
-
-
-def main():
-    app = QApplication(sys.argv)
-    w = QWidget()
-    w.setWindowTitle("P65 XAFS Scan Manager")
-    w.show()
-    sys.exit(app.exec_())
-
-
-if __name__ == "__main__":
-    main()

qexafs.ui

@@ -0,0 +1,212 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>Form</class>
+ <widget class="QWidget" name="Form">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>230</width>
+    <height>460</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>Form</string>
+  </property>
+  <widget class="QWidget" name="">
+   <property name="geometry">
+    <rect>
+     <x>12</x>
+     <y>12</y>
+     <width>212</width>
+     <height>427</height>
+    </rect>
+   </property>
+   <layout class="QGridLayout" name="gridLayout">
+    <item row="0" column="0" colspan="2">
+     <widget class="QLabel" name="label">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Maximum">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="font">
+       <font>
+        <pointsize>20</pointsize>
+        <weight>75</weight>
+        <bold>true</bold>
+        <kerning>true</kerning>
+       </font>
+      </property>
+      <property name="text">
+       <string>Scan Parameters</string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="0" colspan="2">
+     <widget class="QTableWidget" name="tableWidget">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Expanding" vsizetype="Maximum">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>350</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>200</width>
+        <height>16777215</height>
+       </size>
+      </property>
+      <property name="autoFillBackground">
+       <bool>true</bool>
+      </property>
+      <row>
+       <property name="text">
+        <string>Energy</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Edge </string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Start Scan</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>End Scan</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Total Scan Time</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Time per Point</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Undulator Offset</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Sample Name</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Sample Position</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Motor Position</string>
+       </property>
+      </row>
+      <row>
+       <property name="text">
+        <string>Number of Scans</string>
+       </property>
+      </row>
+      <column>
+       <property name="text">
+        <string>Value</string>
+       </property>
+      </column>
+      <item row="0" column="0">
+       <property name="text">
+        <string>7112</string>
+       </property>
+      </item>
+      <item row="1" column="0">
+       <property name="text">
+        <string>Fe_K</string>
+       </property>
+      </item>
+      <item row="2" column="0">
+       <property name="text">
+        <string>150</string>
+       </property>
+      </item>
+      <item row="3" column="0">
+       <property name="text">
+        <string>1000</string>
+       </property>
+      </item>
+      <item row="4" column="0">
+       <property name="text">
+        <string>180</string>
+       </property>
+      </item>
+      <item row="5" column="0">
+       <property name="text">
+        <string>0.1</string>
+       </property>
+      </item>
+      <item row="6" column="0">
+       <property name="text">
+        <string>50</string>
+       </property>
+      </item>
+      <item row="7" column="0">
+       <property name="text">
+        <string>Fe_foil</string>
+       </property>
+      </item>
+      <item row="8" column="0">
+       <property name="text">
+        <string>0</string>
+       </property>
+      </item>
+      <item row="9" column="0">
+       <property name="text">
+        <string>0</string>
+       </property>
+      </item>
+      <item row="10" column="0">
+       <property name="text">
+        <string>1</string>
+       </property>
+      </item>
+     </widget>
+    </item>
+    <item row="2" column="0">
+     <widget class="QPushButton" name="pushButton">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Minimum" vsizetype="Maximum">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="text">
+       <string>Add Scan</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="1">
+     <widget class="QPushButton" name="pushButton_2">
+      <property name="text">
+       <string>Cancel</string>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+ </widget>
+ <resources/>
+ <connections/>
+</ui>

xafs_GUI.py

@@ -0,0 +1,161 @@
+"""
+@author: Ruidy Nemausat
+"""
+
+from EXAFS_Monitor.monitor_gui import MonitorWidget
+import sys
+from PyQt5.QtWidgets import QApplication, QWidget, QMainWindow
+from main_gui import MainGui
+from functools import partial
+
+
+class XafsManager(QWidget, MainGui):
+    """
+    Graphical-User Interface for P65 beamline
+    """
+
+    def __init__(self):
+        """
+        constructor: initializes GUI layout from MainGui class
+        """
+        super().__init__()
+        self.setupUi(self)
+
+        # self.pushButton.clicked.connect(self.listWidget)
+
+        # self.connect(
+        #     self.loadLast,
+        #     SIGNAL("clicked()"),
+        #     partial(self.readLast)
+        # )
+
+        # self.connect(
+        #     self.add2list,
+        #     SIGNAL("clicked()"),
+        #     partial(self.make_dict, scanListe)
+        # )
+
+        # self.connect(
+        #     self.start,
+        #     SIGNAL("clicked()"),
+        #     partial(self.startScans)
+        # )
+
+        # self.connect(
+        #     self.clearList,
+        #     SIGNAL("clicked()"),
+        #     partial(self.clearScans, scanListe)
+        # )
+        # Defines a single scan and returns the parameter as a dictionary object
+#     def make_dict(self, scanListe):
+#             # Collect all the input
+#         edge_n = str(self.edge_name.text())
+#         if str(edge_n) == "":
+#             showMessageBox(self, "Edge Name")
+#         dsPar = str(self.ds_param.text())
+#         """if str(dsPar) == "":
+# 			EXAFS_GUI_common.showMessageBox(self,"DS parameter")"""
+#         edge_e = str(self.edge_energy.text())
+#         if str(edge_e) == "":
+#             showMessageBox(self, "Edge energy")
+#         sam_p = str(self.sam_pos.text())
+#         if str(sam_p) == "":
+#             showMessageBox(self, "Sample Position")
+#         sam_n = str(self.sam_name.text())
+#         if str(sam_n) == "":
+#             showMessageBox(self, "Sample Name")
+#         sam_r = str(self.sam_rep.text())
+#         if str(sam_r) == "":
+#             showMessageBox(self, "Number of repetitions")
+#         motor_n = str(self.motor_number.text())
+#         if str(motor_n) == "":
+#             showMessageBox(self, "Motor number")
+#         # there is always a value, so no check
+#         keith1 = str(self.keith_1.value())
+#         keith2 = str(self.keith_2.value())
+#         keith3 = str(self.keith_3.value())
+#         keith4 = str(self.keith_4.value())
+#         cont_s = str(self.cont_start.text())
+#         if str(cont_s) == "":
+#             showMessageBox(self, "Energy start")
+#         if float(cont_s) < 0:  # Correct automatically if users insert a negative value
+#             cont_s = str(float(cont_s) * -1)
+#             print(cont_s)
+#         cont_en = str(self.cont_stop.text())
+#         if str(cont_en) == "":
+#             showMessageBox(self, "Energy scan end")
+#         cont_t = str(self.cont_tot_time.text())
+#         if str(cont_t) == "":
+#             showMessageBox(self, "Time per scan")
+#         tpp = str(self.timepp.text())
+#         if str(tpp) == "":
+#             showMessageBox(self, "Time per point")
+#         und_o = str(self.und_off.text())
+#         if str(und_o) == "":
+#             showMessageBox(self, "Undulator offset")
+#         data_d = str(self.data_dir.text())
+#         if str(data_d) == "":
+#             showMessageBox(self, "Data directory")
+#         type_t = self.type_trans.isChecked()
+#         type_p = self.type_pips.isChecked()
+#         type_x = self.type_Xia.isChecked()
+#         which_d = str(self.StorageChooser.currentText())
+#         ds_1 = self.do_something_1.isChecked()
+#         ds_2 = self.do_something_2.isChecked()
+
+# # Write the input into a dictionary
+#         scan_spec = {
+#             "edge_n": edge_n,
+#             "dsPar": dsPar,
+#             "edge_e": edge_e,
+#             "sam_p": sam_p,
+#             "sam_n": sam_n,
+#             "sam_r": sam_r,
+#             "keith1": keith1,
+#             "keith2": keith2,
+#             "keith3": keith3,
+#             "keith4": keith4,
+#             "motor_n": motor_n,
+#             "cont_s": cont_s,
+#             "cont_en": cont_en,
+#             "cont_t": cont_t,
+#             "tpp": tpp,
+#             "und_o": und_o,
+#             "data_d": data_d,
+#             "type_t": type_t,
+#             "type_p": type_p,
+#             "type_x": type_x,
+#             "which_d": which_d,
+#             "ds_1": ds_1,
+#             "ds_2": ds_2
+#         }
+#         with open(path + '/last_cont_scan.json', 'w') as f3:
+#             # Use to restore last scan's settings
+#             json.dump(scan_spec, f3, indent=2)
+#         scanListe.append(scan_spec)
+#         print("Make my scan...")
+#         if os.path.isfile(path + "/ListOfScans.json"):
+#             os.remove(path + "/ListOfScans.json")
+#         with open(path + '/ListOfScans.json', 'a') as f1:
+#             json.dump(scanListe, f1, indent=2)
+#         print(scanListe)
+
+#         return scanListe
+
+    def showMessageBox(self, missing):
+        QMessageBox.information(
+            self, "Problem!!!", "Missing parameter: " + missing)
+
+
+def main():
+    """
+    Displays a XafsManager window
+    """
+    app = QApplication(sys.argv)
+    x = XafsManager()
+    x.show()
+    sys.exit(app.exec_())
+
+
+if __name__ == "__main__":
+    main()